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@5c935b
|
4 years |
tiago |
Fix problem with filtered graph in absolute_trust()
|
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@1a3d21
|
4 years |
tiago |
Fix trivial bug in 'all' module
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|
@6ed7bd
|
4 years |
tiago |
Small doc fixes.
|
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@23f6f4
|
4 years |
tiago |
Fix bug with self-loops in Graph.clear_vertex()
Since the same edge ...
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@4708d1
|
4 years |
tiago |
Docstring examples fixes
Small fixes of some examples in the docstrings.
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@10dd7b
|
4 years |
tiago |
Revert weight calculation in absolute_trust()
Use the original, simpler, ...
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@3f400d
|
4 years |
tiago |
Include minimum distance algorithms
This includes the shortest_distance() ...
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@5d995a
|
4 years |
tiago |
Fix problem with dirty sys.path entries in inline()
This is a workaround ...
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@19b68a
|
4 years |
tiago |
Fix draw_graph() for filtered graphs
|
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@083a4d
|
4 years |
tiago |
Fix path weights in absolute_trust()
This fixes how paths are weighted in ...
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@2db745
|
4 years |
tiago |
Several documentation fixes and extensions
This completes all the ...
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@bb499c
|
4 years |
tiago |
Rename dominator_tree()
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@8aba5e
|
4 years |
tiago |
Fix 'penwidth' parameter in graph_draw()
|
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@1d47731
|
4 years |
tiago |
Return None in PropertyMap.a if no array is available
|
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@f12d54
|
4 years |
tiago |
Modify absolute_centrality implementation
This dumps the random-path ...
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@c6c01d
|
4 years |
tiago |
Edge and vertex descriptors now carry a weakref to their Graphs
This ...
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@06b291
|
4 years |
tiago |
Speed up motifs() and motif_significance()
In both functions we can save ...
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@4d69fc
|
4 years |
tiago |
Assorted docstring inclusions/modifications
Mostly in the flow and ...
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|
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@8b1d33
|
4 years |
tiago |
Fix bug in community_structure() documentation
The value "random" should ...
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|
@0ac9b1
|
4 years |
tiago |
Implement graph_union()
This returns the union of two graphs, and ...
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@389812
|
4 years |
tiago |
Enable value type selection in Graph.copy_property()
|
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@494a20
|
4 years |
tiago |
Allow for simple scaling in vertex and edge sizes in graph_draw()
|
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@5540d1
|
4 years |
tiago |
Include PropertyMap.a property
This provides convienent access to the ...
|
|
|
|
@41a677
|
4 years |
tiago |
Change default number of shuffles to 100 in motif_significance()
|
|
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|
@88fe82
|
4 years |
tiago |
Implement 'spectral' module
This includes generations of releated ...
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|
|
@a9b5ee
|
4 years |
tiago |
Fix typo bug in isomorphism()
|
|
|
|
@f2f45f
|
4 years |
tiago |
Small fixes in docstrings to reflect changes in graph_draw()
|
|
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|
@62dc25
|
4 years |
tiago |
Include option to produce no output in graph_draw()
If output==None, no ...
|
|
|
|
@cdfc8b
|
4 years |
tiago |
Fix import bug in clustering module
Load 'topology' instead of 'misc'.
|
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|
@73fe12
|
4 years |
tiago |
Implement layout module ('draw' from python) and arf layout
This ...
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|
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@0db15a
|
4 years |
tiago |
Implement group_vector_property() and ungroup_vector_property()
These ...
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|
|
|
@29f83e
|
4 years |
tiago |
Resuscitate distance_histogram() and sampled_distance_histogram()
|
|
|
|
@b42497
|
4 years |
tiago |
Resuscitate the line_graph() code
|
|
|
|
@1d16a0
|
4 years |
tiago |
Include max_cardinality_matching() in flow module
|
|
|
|
@7fb5d7
|
4 years |
tiago |
Dump lambda::bind in favor of boost::bind
This is a large commit which ...
|
|
|
|
@a89e06
|
4 years |
tiago |
Implement flow algorithms
This includes the edmonds karp, push relabel ...
|
|
|
|
@55bee9
|
4 years |
tiago |
Rename community_network() to condensation_graph()
|
|
|
|
@db7589
|
4 years |
tiago |
Move graph component code from 'stats' to 'topology' module
|
|
|
|
@6d1a9e
|
4 years |
tiago |
Implement label_biconnected_components()
|
|
|
|
@217b9d
|
4 years |
tiago |
Implement predecessor_tree()
|
|
|
|
@c21a36
|
4 years |
tiago |
Implement denominator_tree(), min_spanning_tree() and transitive_closure()
|
|
|
|
@c0b0a6
|
4 years |
tiago |
Add is_writable() method to PropertyMap
This also includes convenience ...
|
|
|
|
@ebccfe
|
4 years |
tiago |
Add min_spanning_tree() function
|
|
|
|
@5faf40
|
4 years |
tiago |
Fix example in community_structure()
load() function no longer supported ...
|
|
|
|
@d34568
|
4 years |
tiago |
Rename "misc" module as "topology"
|
|
|
|
@2f7a47
|
4 years |
tiago |
Fix edge/vertex normalization option in graph_draw()
|
|
|
|
@f257d4
|
4 years |
tiago |
Reorganize exceptions thrown
No longer only thrown GraphError upon any ...
|
|
|
|
@54f5c4
|
4 years |
tiago |
Modify absolute_trust() algorithm
Path sampling is done using different ...
|
|
|
|
@e05fa7
|
4 years |
tiago |
Include docstring for random_rewire()
|
|
|
|
@b4876db
|
4 years |
tiago |
Fix stash/pop_filter() bug
This would cause the graph to become directed ...
|
|
|
|
@b18d32
|
4 years |
tiago |
Fix returned position scale in graph_draw()
This is a workaround for a ...
|
|
|
|
@0f1ea3
|
4 years |
tiago |
Fix bug in usage of tr1::variate_generator
The RNG object must be passed ...
|
|
|
|
@548800
|
4 years |
tiago |
Fix bias bug in random_graph() in correlated mode
Target degrees were not ...
|
|
|
|
@b0c2a3
|
4 years |
tiago |
Move random_rewire() to 'generation' module
|
|
|
|
@7e6968
|
4 years |
tiago |
Implement show_config()
This prints useful library information.
|
|
|
|
@36b305
|
4 years |
tiago |
Remove obsolete test units
We will rely on sphinx + docstrings instead.
|
|
|
|
@11e049
|
4 years |
tiago |
Force loading of numpy and scipy during import
Import numpy and scipy ...
|
|
|
|
@30ac60
|
4 years |
tiago |
Add random_graph() docstring
|
|
|
|
@d9ea11
|
4 years |
tiago |
Small fix in draw module docstrings
|
|
|
|
@592374
|
4 years |
tiago |
Fix typo in avg_neighbour_corr()
|
|
|
|
@602541
|
4 years |
tiago |
Include docstrings in graph_draw()
|
|
|
|
@58fe4d
|
4 years |
tiago |
Include min_inter parameter in absolute_trust()
|
|
|
|
@40fb81
|
4 years |
tiago |
Improve community detection code and write documentation
|
|
|
|
@e1dd16
|
4 years |
tiago |
Improve correlated graph generation
random_graph() now uses a modified ...
|
|
|
|
@7da1f0
|
4 years |
tiago |
Ongoing documentation improvement
This modified several docstrings and ...
|
|
|
|
@9d542a
|
4 years |
tiago |
Make tgt parameter of Graph.copy_property() optional
|
|
|
|
@9c825c
|
4 years |
tiago |
Fix absolute trust weighting and add reverse trust
|
|
|
|
@b93b50
|
4 years |
tiago |
Change Graph.stash_filter() semantics
Now the parameter "all" is ignored, ...
|
|
|
|
@f5d542
|
4 years |
tiago |
Allow for direct creation of undirected graphs
The following is now ...
|
|
|
|
@2867d7
|
4 years |
tiago |
Add conversion from Vertex and Edge to int and tuple
The following ...
|
|
|
|
@ca4c12
|
4 years |
tiago |
Modify absolute trust
Now paths are weighted according to their trust ...
|
|
|
|
@95484c
|
4 years |
tiago |
Some improvements in graph_draw()
Vertex/edge colors are properly plotted ...
|
|
|
|
@18445c
|
4 years |
tiago |
Allow choosing of different shuffling strategies in motif profile code
|
|
|
|
@a5eabf
|
4 years |
tiago |
Better documentation for graph filtering
|
|
|
|
@228695
|
4 years |
tiago |
Fix property type parsing in new_*_property()
|
|
|
|
@ede94a
|
4 years |
tiago |
Still import draw module, even when gv not present
graph_draw() won't ...
|
|
|
|
@b7188a
|
4 years |
tiago |
Add support for a single source in absolute trust code
|
|
|
|
@0f15b1
|
4 years |
tiago |
Small docstring fix.
|
|
|
|
@07a2d0
|
4 years |
tiago |
Docstrings and small fixes in centrality algorithms
This fully documents ...
|
|
|
|
@954056
|
4 years |
tiago |
Fix small bug in local/extendend_clustering
The function directed() no ...
|
|
|
|
@08d96f
|
4 years |
tiago |
Adds support for removal of labeled edges, self-loops and parallel-edges
|
|
|
|
@44d4db
|
4 years |
tiago |
Change default parameters of stash_filter() and pop_filter()
Now all ...
|
|
|
|
@1615ec
|
4 years |
tiago |
Include support for motif significance profile
This includes the function ...
|
|
|
|
@1270f0
|
4 years |
tiago |
Selective stash/pop of graph filter state
Individual filters can be ...
|
|
|
|
@6f223e
|
4 years |
tiago |
Small docstring typo
|
|
|
|
@7a26fd
|
4 years |
tiago |
Add type alias in property creation for convenience
|
|
|
|
@e4c093
|
4 years |
tiago |
Fix pickle support
This was not working due to filtering semantics ...
|
|
|
|
@aa0275
|
4 years |
tiago |
Fix save() and load() when 'filename' is a file object
|
|
|
|
@5cca53
|
4 years |
tiago |
Add motifs() function to clustering module
This implements an efficient ...
|
|
|
|
@b15820
|
4 years |
tiago |
Include isomorphism() function in misc module
|
|
|
|
@267887
|
4 years |
tiago |
Hash all include files in run_action to force recompilation if any header ...
|
|
|
|
@a962d1
|
4 years |
tiago |
Properly remove in- and out-edges when vertex is removed
The edge index ...
|
|
|
|
@ff5db9
|
4 years |
tiago |
Add member functions remove_vertex_if and remove_edge_if to Graph
This ...
|
|
|
|
@9b12a4
|
4 years |
tiago |
Fix trivial error in node/edge search functions
|
|
|
|
@52eaa3
|
4 years |
tiago |
Add convenient neighbour traversal functions
Add support for ...
|
|
|
|
@96b9c5
|
4 years |
tiago |
Add centrality module
This adds the centrality module, which supports ...
|
|
|
|
@7f10e9
|
4 years |
tiago |
Fix seeding in random_graph()
The seed option is now correctly ...
|
|
|
|
@be9b25
|
4 years |
tiago |
Fix graph_draw() seeding
The seed option is now properly passed to ...
|
|
|
|
@0c87c4
|
4 years |
tiago |
Improve run_action module
Now inline() automatically converts known ...
|
|
|
|
@64018e
|
4 years |
tiago |
Expand user dir (~) in file IO
e.g., g.save("~/foo.xml")
|
|
|
|